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Whole-blood reference expression matrix

Source: R/dataWholeBlood.R
dataWholeBlood.Rd

A numeric matrix of whole-blood gene expression where rows correspond to genes and columns to samples.

Usage

data(dataWholeBlood)

Format

A numeric matrix with G genes (rows) and N samples (columns). Row names are gene symbols, and column names are sample IDs.

Source

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE130824

Value

A numeric matrix of expression values.

Details

This object is a whole-blood RNA-seq expression matrix. The source data are publicly available from NCBI GEO under accession GSE130824 (Homo sapiens whole-blood RNA-seq, 36 samples). Raw sequencing data are deposited in SRA, and the processed normalized expression file is provided as GSE130824_dataNormedFiltered.txt.gz. The matrix bundled with CLAMP is derived from that processed file and serves as a compact example dataset for package demonstrations and unit tests.

Examples

data(dataWholeBlood)