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CLAMP
0.99.0
Reference
Articles
Comparing CLAMPbase and CLAMPfull
Analyzing human RNA-Seq data with CLAMP
Changelog
Changelog
Source:
NEWS.md
CLAMP 0.99.0
New features
Initial Bioconductor submission.
Implements prior-informed latent variable decomposition for gene expression.
Supports file-backed matrices (
bigstatsr::FBM
) for large datasets.
Added CPM, z-score, and filtering functions for preprocessing.
Projection of new datasets into pre-trained models.
Vignettes with example workflows and detailed documentation.
Improvements
Optimized in-place operations for large matrices.
Added cross-validation utilities and adaptive sparsity support.
Roxygen2 documentation for all exported functions.
Bug fixes
Fixed edge case in CPM normalization for zero-count columns.
Corrected NA handling in preprocessing.
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