Installation

Using a managed environment

• Requirements: Python 3.11–3.13, recent pip/setuptools/wheel.
• Create and activate an env (pick one):
• Conda: conda create -n dlem-env python=3.12 -y && conda activate dlem-env
• Mamba/Micromamba: mamba create -n dlem-env python=3.12 -y && mamba activate dlem-env
• python -m venv: python3 -m venv .venv && source .venv/bin/activate
• virtualenv: python3 -m pip install --upgrade virtualenv && python3 -m virtualenv .venv && source .venv/bin/activate
• Upgrade tooling: python -m pip install --upgrade pip setuptools wheel
• Option A: local checkout
• Clone and enter the repo: git clone https://github.com/chikinalab/dLEM.git && cd dLEM
• Install: python -m pip install .
• Option B: direct from GitHub (no local clone)
• python -m pip install "git+https://github.com/chikinalab/dLEM.git"

From Pypi

pip install dlem-jax

From source

pip install git+https://github.com/chikinalab/dLEM.git

Container

docker run ghcr.io/dborgesr/dlem:latest

Contributing

git clone https://github.com/chikinalab/dLEM.git

Using local pixi

pixi install -e

Using Docker

docker-compose build

docker-compose up --watch